PackagePackage description 


joint species distribution models 

jSDMFunctions for joint species distribution models 

Binomial probit regression 

Binomial probit regression with selected constrained species 

Binomial probit regression on long format data 

Binomial logistic regression 

Poisson regression with log link function 

Binomial probit regression 

DataDatasets used in examples 

frogs dataset 

mosquitos dataset 

eucalypts dataset 

fungi dataset 

birds dataset 

mites dataset 

Distribution of Alpine plants in Aravo (Valloire, France) 

Madagascar's forest inventory 

MiscellaneousMiscellaneous functions 

Generalized logit function 

Generalized inverse logit function 

Calculate the residual correlation matrix from a latent variable model (LVM) 

Extract covariances and correlations due to shared environmental responses 

Plot the residual correlation matrix from a latent variable model (LVM). 

plot_associations plot speciesspecies associations 

PredictS3 method to predict from a jSDM model 

Predict method for models fitted with jSDM 