mosquitos.RdPresence or absence at 167 sites of 16 species that constitute the aquatic faunal community studied, 13 covariates collected at these sites and their coordinates.
data("mosquitos")A data frame with 167 observations on the following 31 variables :
Culex_pipiens_sla binary vector (mosquito species)
Culex_modestusa binary vector (mosquito species)
Culiseta_annulataa binary vector (mosquito species)
Anopheles_maculipennis_sla binary vector (mosquito species)
waterboatmen__Corixidaea binary vector
diving_beetles__Dysticidaea binary vector
damselflies__Zygopteraa binary vector
swimming_beetles__Haliplidaea binary vector
opossum_shrimps__Mysidaea binary vector
ditch_shrimp__Gammarusa binary vector
beetle_larvae__Coleopteraa binary vector
dragonflies__Anisopteraa binary vector
mayflies__Ephemeropteraa binary vector
newts__Pleurodelinaea binary vector
fisha binary vector
saucer_bugs__Ilyocorisa binary vector
depth__cma numeric vector corresponding to the water depth in cm recorded as the mean of the depth at the edge and the centre of each dip site
temperature__Ca numeric vector corresponding to the temperature in °C
oxidation_reduction_potential__Mva numeric vector corresponding to the redox potential of the water in millivolts (mV)
salinity__ppta numeric vector corresponding to the salinity of the water in parts per thousand (ppt)
water_crowfoot__Ranunculusa binary vector indicating presence on sites by a 1 and absence by a 0 of the plant species Ranunculus aquatilis which common name is water-crowfoot
rushes__Juncus_or_Scirpusa binary vector indicating presence on sites by a 1 and absence by a 0 of rushes from the Juncus or Scirpus genus
filamentous_algaea binary vector indicating presence on sites by a 1 and absence by a 0 of filamentous algae
emergent_grassa binary vector indicating presence on sites by a 1 and absence by a 0 of emergent grass
ivy_leafed_duckweed__Lemna_trisulcaa binary vector indicating presence on sites by a 1 and absence by a 0 of ivy leafed duckweed of species Lemna trisulca
bulrushes__Typhaa binary vector indicating presence on sites by a 1 and absence by a 0 of bulrushes from the Typha genus
reeds_Phragmitesa binary vector indicating presence on sites by a 1 and absence by a 0 of reeds from the Phragmites genus
marestail__Hippurisa binary vector indicating presence on sites by a 1 and absence by a 0 of plants from the Hippuris genus known as mare's-tail
common_duckweed__Lemna_minora binary vector indicating presence on sites by a 1 and absence by a 0 of common duckweed of species Lemna minor
xa numeric vector of first coordinates corresponding to each site
ya numeric vector of second coordinates corresponding to each site
Wilkinson, D. P.; Golding, N.; Guillera-Arroita, G.; Tingley, R. and McCarthy, M. A. (2018) A comparison of joint species distribution models for presence-absence data. Methods in Ecology and Evolution.
data(mosquitos, package="jSDM")
head(mosquitos)
#> Culex_pipiens_sl Culex_modestus Culiseta_annulata Anopheles_maculipennis_sl
#> 1 0 0 0 1
#> 2 0 1 0 1
#> 3 1 1 0 1
#> 4 0 0 0 1
#> 5 1 1 0 1
#> 6 1 0 0 1
#> waterboatmen__Corixidae diving_beetles__Dysticidae damselflies__Zygoptera
#> 1 1 0 1
#> 2 0 1 1
#> 3 1 0 1
#> 4 1 0 0
#> 5 1 0 1
#> 6 1 0 1
#> swimming_beetles__Haliplidae opossum_shrimps__Mysidae ditch_shrimp__Gammarus
#> 1 0 0 0
#> 2 1 0 1
#> 3 0 0 0
#> 4 0 0 0
#> 5 1 0 0
#> 6 1 0 0
#> beetle_larvae__Coleoptera dragonflies__Anisoptera mayflies__Ephemeroptera
#> 1 1 0 1
#> 2 0 0 0
#> 3 0 0 1
#> 4 0 0 0
#> 5 1 0 0
#> 6 0 0 1
#> newts__Pleurodelinae fish saucer_bugs__Ilyocoris depth__cm temperature__C
#> 1 0 0 0 13.33333 22.5500
#> 2 0 0 0 34.37500 19.7500
#> 3 1 0 1 18.75000 18.3725
#> 4 0 0 0 36.87500 19.9475
#> 5 0 0 1 11.87500 21.0050
#> 6 0 0 0 17.50000 17.8925
#> oxidation_reduction_potential__Mv salinity__ppt water_crowfoot__Ranunculus
#> 1 -26.00 0.8333333 0
#> 2 -2.50 4.8900000 1
#> 3 -36.50 4.1750000 1
#> 4 -19.25 3.1025000 0
#> 5 -74.50 7.1050000 0
#> 6 -28.75 2.6250000 0
#> rushes__Juncus_or_Scirpus filamentous_algae emergent_grass
#> 1 1 1 1
#> 2 1 1 0
#> 3 1 1 0
#> 4 1 1 0
#> 5 1 1 0
#> 6 1 1 0
#> ivy_leafed_duckweed__Lemna_trisulca bulrushes__Typha reeds_Phragmites
#> 1 0 0 0
#> 2 0 0 0
#> 3 0 0 0
#> 4 0 0 0
#> 5 0 0 1
#> 6 0 0 0
#> marestail__Hippuris common_duckweed__Lemna_minor x y
#> 1 1 0 191.5561 59.87633
#> 2 0 0 191.5466 59.84163
#> 3 0 0 191.3421 59.84280
#> 4 1 0 191.2939 59.57974
#> 5 0 0 191.6692 59.79505
#> 6 0 1 191.3501 59.75232