PackagePackage description 


hierarchical Bayesian species distribution models 

DataData available in 

Virtual altitudinal data 

Count data for the Willow tit (from Kéry and Royle 2010) 

Data of presenceabsence (from Latimer et al. 2006) 

Neighborhood data (from Latimer et al. 2006) 

Counts of the number of frogs in a water body 

Environmental data for South Africa's Cap Floristic Region 

Occurrence data for Protea punctata Meisn. in the Cap Floristic Region 

OccurrenceFunctions for occurrence (presence/absence) data 

Binomial logistic regression model 

Binomial logistic regression model with CAR process 

Site occupancy model 

Siteoccupancy model with CAR process 

CountFunctions for count (abundance) data 

Poisson log regression model 

Poisson log regression model with CAR process 

Nmixture model with K, the maximal theoretical abundance 

Nmixture model 

Nmixture model with CAR process 

ZeroInflationFunctions for zeroinflated data 

ZIB (ZeroInflated Binomial) model 

ZIB (ZeroInflated Binomial) model with CAR process 

ZIB (ZeroInflated Binomial) model with CAR process taking into account site alteration 

ZIP (ZeroInflated Poisson) model 

ZIP (ZeroInflated Poisson) model with CAR process 

ZIP (ZeroInflated Poisson) model with CAR process taking into account site alteration 

MiscellaneousMiscellaneous functions 

Generalized logit and inverse logit function 

PredictS3 method to predict from an hSDM model 

Predict method for models fitted with hSDM 