Plot presence absence and estimated probabilities of presence for one species. Possibility to save plots

Plot presence absence and estimated probabilities of presence for one species. Possibility to save plots

plot_pres_est_one_species(
  jSDM_binom_pro,
  species_to_plot = colnames(jSDM_binom_pro$model_spec$presence_data)[1],
  coord_site,
  country_name = NULL,
  latlon_output = NULL,
  display_plot = TRUE,
  save_plot = FALSE
)

Arguments

jSDM_binom_pro

object of class jSDM. output of "jSDM_binomial_probit" of "jSDM" library

species_to_plot

character. species to plot, default is the first species of the list.

coord_site

dataframe. columns name must contain latitude and longitude as names.

country_name

character. English name of the country where are inventory sites, default is NULL.

latlon_output

float vector. inconsistent with `country_name` coord of output box is this format lon_min, lat_min, lon_max, lat_max, default is NULL.

display_plot

boolean. show plot, default is TRUE.

save_plot

boolean. Write plot in plot folder as .png files, default is FALSE.